feat: implement interactive CLI with key-value operations, add development journal, and update roadmap for DAG conflict resolution

Cargo.toml

@@ -4,6 +4,7 @@ members = [
     "lattice-core",
     "lattice-net",
     "lattice-store",
+    "lattice-cli",
 ]
 
 [workspace.package]
@@ -16,6 +17,10 @@ license = "MIT"
 lattice-core = { path = "lattice-core" }
 lattice-net = { path = "lattice-net" }
 lattice-store = { path = "lattice-store" }
+lattice-cli = { path = "lattice-cli" }
+
+# CLI
+rustyline = "17"
 
 # Networking (Iroh)
 iroh = "0.95"

docs/roadmap.md

@@ -12,7 +12,7 @@
 - [x] Log file I/O (append, read, hash verification)
 - [x] SigChain (validate entries before appending)
 - [x] Store (redb) — `kv` + `meta` tables, log replay
-- [ ] Interactive CLI: `init`, `put`, `get`, `delete`, `status`, `quit`
+- [x] Interactive CLI: `init`, `put`, `get`, `delete`, `status`, `quit`
 
 ### Success Criteria
 
@@ -30,20 +30,39 @@ Current code assumes single store. Changes needed:
 - [ ] Log paths → `stores/{uuid}/logs/{author}.log`
 - [ ] Add global meta.db for stores table
 - [ ] Proto: SignedEntry/messages need store_id (UUID)
-- [ ] Proto: Entry needs `parent_hashes` for DAG (not just `prev_hash`)
-- [ ] Store: keys/values → `Vec<u8>` (binary, not String)
-- [ ] Store: KV table value → `Vec<HeadInfo>` for DAG heads
 - [ ] CLI → `create-store`, `list-stores`, `use <store>`
 
 ---
 
+## Milestone 1.5: DAG Conflict Resolution ← NEXT
+
+**Goal:** Upgrade store from simple LWW to DAG-based conflict resolution per architecture.md.
+
+### Deliverables
+
+- [ ] Proto: Add `repeated bytes parent_hashes` to Entry (for DAG causality, separate from sigchain `prev_hash`)
+- [ ] Store: keys → `Vec<u8>` (binary, not String)
+- [ ] Store: KV table schema → `Vec<u8> → Vec<HeadInfo>` where `HeadInfo = { value, hlc, author, hash }`
+- [ ] Store: `applied_frontiers` table → `author_id → (seq, hash)` per author
+- [ ] Store: `apply_entry` → track multiple heads, merge parent tips into new tip
+- [ ] Store: `get` → deterministic winner from heads (highest HLC, author_id tiebreaker)
+- [ ] EntryBuilder: `.parent_hashes(...)` method for DAG ancestry
+
+### Success Criteria
+
+- Concurrent writes to same key create multiple heads
+- Reads return deterministic winner
+- Next write citing both heads merges fork to single tip
+- All existing tests still pass
+
+---
+
 ## Milestone 2: Two-Node Sync
 
 **Goal:** Two nodes can sync their logs over the network.
 
 ### Deliverables
 
-- [ ] Store: add `applied_frontiers` table (sync state per author)
 - [ ] VectorClock module (diff, merge, missing entries)
 - [ ] Sync protocol (push missing entries)
 - [ ] Iroh integration (peer discovery, connection)

lattice-cli/Cargo.toml

@@ -0,0 +1,17 @@
+[package]
+name = "lattice-cli"
+description = "Interactive CLI for Lattice"
+version.workspace = true
+edition.workspace = true
+license.workspace = true
+
+[[bin]]
+name = "lattice"
+path = "src/main.rs"
+
+[dependencies]
+lattice-core = { workspace = true }
+rustyline = { workspace = true }
+hex = { workspace = true }
+thiserror = { workspace = true }
+shlex = "1"

lattice-cli/src/commands.rs

@@ -0,0 +1,152 @@
+//! CLI command handlers (presentation layer)
+
+use crate::node::LatticeNode;
+use std::time::Instant;
+
+/// Command handler function type
+pub type Handler = fn(&mut LatticeNode, &[String]);
+
+/// Command definition
+pub struct Command {
+    pub name: &'static str,
+    pub args: &'static str,
+    pub description: &'static str,
+    pub min_args: usize,
+    pub max_args: usize,
+    pub handler: Handler,
+}
+
+/// Build the command registry
+pub fn commands() -> Vec<Command> {
+    vec![
+        Command {
+            name: "put",
+            args: "<key> <value>",
+            description: "Store a key-value pair",
+            min_args: 2,
+            max_args: 2,
+            handler: cmd_put,
+        },
+        Command {
+            name: "get",
+            args: "<key>",
+            description: "Retrieve a value by key",
+            min_args: 1,
+            max_args: 1,
+            handler: cmd_get,
+        },
+        Command {
+            name: "delete",
+            args: "<key>",
+            description: "Delete a key",
+            min_args: 1,
+            max_args: 1,
+            handler: cmd_delete,
+        },
+        Command {
+            name: "list",
+            args: "[-v]",
+            description: "List all key-value pairs (-v for verbose)",
+            min_args: 0,
+            max_args: 1,
+            handler: cmd_list,
+        },
+        Command {
+            name: "status",
+            args: "",
+            description: "Show node statistics",
+            min_args: 0,
+            max_args: 0,
+            handler: cmd_status,
+        },
+        Command {
+            name: "help",
+            args: "",
+            description: "Show this help message",
+            min_args: 0,
+            max_args: 0,
+            handler: cmd_help,
+        },
+    ]
+}
+
+/// Print help from the command registry
+fn cmd_help(_node: &mut LatticeNode, _args: &[String]) {
+    println!("\nLattice Commands:");
+    for cmd in commands() {
+        if cmd.args.is_empty() {
+            println!("  {:<18} {}", cmd.name, cmd.description);
+        } else {
+            println!("  {} {:<10} {}", cmd.name, cmd.args, cmd.description);
+        }
+    }
+    println!("  quit              Exit the CLI");
+    println!("\nTip: Use quotes for values with spaces: put \"my key\" \"hello world\"\n");
+}
+
+fn cmd_status(node: &mut LatticeNode, _args: &[String]) {
+    let status = node.status();
+    println!("--- Node Status ---");
+    println!("Node ID:         {}", status.node_id);
+    println!("Data Dir:        {}", status.data_dir);
+    println!("Log Sequence:    {}", status.log_seq);
+    println!("Applied Entries: {}", status.applied_seq);
+    println!("-------------------");
+}
+
+fn cmd_put(node: &mut LatticeNode, args: &[String]) {
+    let start = Instant::now();
+    match node.put(&args[0], args[1].as_bytes()) {
+        Ok(seq) => println!("OK (seq: {}, time: {:.2?})", seq, start.elapsed()),
+        Err(e) => eprintln!("Error: {}", e),
+    }
+}
+
+fn cmd_get(node: &mut LatticeNode, args: &[String]) {
+    let start = Instant::now();
+    match node.get(&args[0]) {
+        Ok(Some(value)) => {
+            println!("{}", format_value(&value));
+            println!("({:.2?})", start.elapsed());
+        }
+        Ok(None) => println!("(nil)"),
+        Err(e) => eprintln!("Error: {}", e),
+    }
+}
+
+fn cmd_delete(node: &mut LatticeNode, args: &[String]) {
+    let start = Instant::now();
+    match node.delete(&args[0]) {
+        Ok(seq) => println!("OK (seq: {}, time: {:.2?})", seq, start.elapsed()),
+        Err(e) => eprintln!("Error: {}", e),
+    }
+}
+
+fn cmd_list(node: &mut LatticeNode, args: &[String]) {
+    let verbose = args.first().map(|a| a == "-v").unwrap_or(false);
+    let start = Instant::now();
+    match node.list() {
+        Ok(entries) => {
+            if entries.is_empty() {
+                println!("(empty)");
+                return;
+            }
+            for (key, value) in &entries {
+                if verbose {
+                    println!("{} = {} ({} bytes)", key, format_value(value), value.len());
+                } else {
+                    println!("{} = {}", key, format_value(value));
+                }
+            }
+            println!("({} keys, {:.2?})", entries.len(), start.elapsed());
+        }
+        Err(e) => eprintln!("Error: {}", e),
+    }
+}
+
+fn format_value(value: &[u8]) -> String {
+    match std::str::from_utf8(value) {
+        Ok(s) => s.to_string(),
+        Err(_) => format!("0x{}", hex::encode(value)),
+    }
+}

lattice-cli/src/main.rs

@@ -0,0 +1,91 @@
+//! Lattice Interactive CLI
+
+mod node;
+mod commands;
+
+use node::LatticeNodeBuilder;
+use rustyline::error::ReadlineError;
+use rustyline::DefaultEditor;
+
+fn main() {
+    println!("Lattice CLI v{}", env!("CARGO_PKG_VERSION"));
+    println!("Type 'help' for commands, 'quit' to exit.\n");
+
+    let mut node = match LatticeNodeBuilder::new().build() {
+        Ok((n, info)) => {
+            println!("Node ID: {}", info.node_id);
+            println!("Data:    {}", info.data_path);
+            if info.is_new {
+                println!("Status:  New identity created");
+            } else if info.entries_replayed > 0 {
+                println!("Replay:  {} log entries applied", info.entries_replayed);
+            }
+            println!();
+            n
+        }
+        Err(e) => {
+            eprintln!("Failed to initialize node: {}", e);
+            eprintln!("Hint: If data is corrupted, remove the data directory and restart.");
+            return;
+        }
+    };
+
+    let mut rl = DefaultEditor::new().expect("Failed to create editor");
+    let cmds = commands::commands();
+
+    loop {
+        match rl.readline("lattice> ") {
+            Ok(line) => {
+                let line = line.trim();
+                if line.is_empty() {
+                    continue;
+                }
+                let _ = rl.add_history_entry(line);
+
+                let args = match shlex::split(line) {
+                    Some(a) => a,
+                    None => {
+                        println!("Error: mismatched quotes");
+                        continue;
+                    }
+                };
+
+                let cmd_name = match args.first() {
+                    Some(c) => c.as_str(),
+                    None => continue,
+                };
+
+                // Handle quit specially
+                if cmd_name == "quit" || cmd_name == "exit" {
+                    println!("Goodbye!");
+                    break;
+                }
+
+                // Look up command in registry
+                match cmds.iter().find(|c| c.name == cmd_name) {
+                    Some(cmd) => {
+                        let cmd_args = &args[1..];
+                        if cmd_args.len() < cmd.min_args || cmd_args.len() > cmd.max_args {
+                            if cmd.min_args == cmd.max_args {
+                                println!("Usage: {} {}", cmd.name, cmd.args);
+                            } else {
+                                println!("Usage: {} {} (got {} args)", cmd.name, cmd.args, cmd_args.len());
+                            }
+                        } else {
+                            (cmd.handler)(&mut node, cmd_args);
+                        }
+                    }
+                    None => println!("Unknown command: '{}'. Type 'help' for commands.", cmd_name),
+                }
+            }
+            Err(ReadlineError::Interrupted | ReadlineError::Eof) => {
+                println!("Goodbye!");
+                break;
+            }
+            Err(err) => {
+                eprintln!("Error: {:?}", err);
+                break;
+            }
+        }
+    }
+}

lattice-cli/src/node.rs

@@ -0,0 +1,269 @@
+//! Lattice Node API
+//! 
+//! A programmatic interface to a local Lattice node.
+
+use lattice_core::{
+    DataDir, EntryBuilder, Node, SigChain, Store,
+    hlc::HLC,
+    log::LogError,
+    sigchain::SigChainError,
+    store::StoreError,
+};
+use std::path::Path;
+use thiserror::Error;
+
+/// Errors that can occur during node operations
+#[derive(Error, Debug)]
+pub enum NodeError {
+    #[error("IO error: {0}")]
+    Io(#[from] std::io::Error),
+    
+    #[error("Store error: {0}")]
+    Store(#[from] StoreError),
+    
+    #[error("SigChain error: {0}")]
+    SigChain(#[from] SigChainError),
+    
+    #[error("Log error: {0}")]
+    Log(#[from] LogError),
+    
+    #[error("Node error: {0}")]
+    Node(#[from] lattice_core::node::NodeError),
+}
+
+/// Info returned when building a node
+pub struct NodeInfo {
+    pub node_id: String,
+    pub data_path: String,
+    pub is_new: bool,
+    pub entries_replayed: u64,
+}
+
+/// Status information about the node
+pub struct NodeStatus {
+    pub node_id: String,
+    pub data_dir: String,
+    pub log_seq: u64,
+    pub applied_seq: u64,
+}
+
+/// Builder for creating a fully initialized LatticeNode
+pub struct LatticeNodeBuilder {
+    data_dir: DataDir,
+}
+
+impl LatticeNodeBuilder {
+    /// Create a builder with the default data directory
+    pub fn new() -> Self {
+        Self {
+            data_dir: DataDir::default(),
+        }
+    }
+
+    /// Build and initialize the node
+    pub fn build(self) -> Result<(LatticeNode, NodeInfo), NodeError> {
+        // Create directories
+        self.data_dir.ensure_dirs()?;
+
+        // Load or create node identity
+        let key_path = self.data_dir.identity_key();
+        let is_new = !key_path.exists();
+        let node = if key_path.exists() {
+            Node::load(&key_path)?
+        } else {
+            let node = Node::generate();
+            node.save(&key_path)?;
+            node
+        };
+
+        let author_id_hex = hex::encode(node.public_key_bytes());
+        
+        // Load or create sigchain
+        let log_path = self.data_dir.log_file(&author_id_hex);
+        let sigchain = if log_path.exists() {
+            SigChain::from_log(&log_path, node.public_key_bytes())?
+        } else {
+            SigChain::new(&log_path, node.public_key_bytes())
+        };
+
+        // Open store and replay log
+        let store = Store::open(self.data_dir.state_db())?;
+        let entries_replayed = if log_path.exists() {
+            store.replay_log(&log_path)?
+        } else {
+            0
+        };
+
+        let info = NodeInfo {
+            node_id: hex::encode(node.public_key_bytes()),
+            data_path: self.data_dir.base().display().to_string(),
+            is_new,
+            entries_replayed,
+        };
+
+        Ok((LatticeNode {
+            data_dir: self.data_dir,
+            node,
+            sigchain,
+            store,
+        }, info))
+    }
+}
+
+impl Default for LatticeNodeBuilder {
+    fn default() -> Self {
+        Self::new()
+    }
+}
+
+/// A fully initialized Lattice node
+/// 
+/// Use `LatticeNodeBuilder` to create an instance.
+pub struct LatticeNode {
+    data_dir: DataDir,
+    node: Node,
+    sigchain: SigChain,
+    store: Store,
+}
+
+impl LatticeNode {
+    /// Get the node's public key as hex
+    pub fn node_id(&self) -> String {
+        hex::encode(self.node.public_key_bytes())
+    }
+
+    /// Get the path to the data directory
+    pub fn data_path(&self) -> &Path {
+        self.data_dir.base()
+    }
+
+    /// Get the current status of the node
+    pub fn status(&self) -> NodeStatus {
+        NodeStatus {
+            node_id: self.node_id(),
+            data_dir: self.data_dir.base().display().to_string(),
+            log_seq: self.sigchain.len(),
+            applied_seq: self.store.last_seq().unwrap_or(0),
+        }
+    }
+
+    /// Put a key-value pair
+    pub fn put(&mut self, key: &str, value: &[u8]) -> Result<u64, NodeError> {
+        let entry = EntryBuilder::new(self.sigchain.next_seq(), HLC::now())
+            .prev_hash(self.sigchain.last_hash().to_vec())
+            .put(key, value.to_vec())
+            .sign(&self.node);
+
+        self.commit_entry(entry)
+    }
+
+    /// Get a value by key
+    pub fn get(&self, key: &str) -> Result<Option<Vec<u8>>, NodeError> {
+        Ok(self.store.get(key)?)
+    }
+
+    /// List all key-value pairs
+    pub fn list(&self) -> Result<Vec<(String, Vec<u8>)>, NodeError> {
+        Ok(self.store.list_all()?)
+    }
+
+    /// Delete a key
+    pub fn delete(&mut self, key: &str) -> Result<u64, NodeError> {
+        let entry = EntryBuilder::new(self.sigchain.next_seq(), HLC::now())
+            .prev_hash(self.sigchain.last_hash().to_vec())
+            .delete(key)
+            .sign(&self.node);
+
+        self.commit_entry(entry)
+    }
+
+    /// Commit a signed entry: append to log via sigchain, then apply to store
+    fn commit_entry(&mut self, entry: lattice_core::proto::SignedEntry) -> Result<u64, NodeError> {
+        self.sigchain.append(&entry)?;
+        self.store.apply_entry(&entry)?;
+
+        Ok(self.sigchain.len())
+    }
+}
+
+#[cfg(test)]
+mod tests {
+    use super::*;
+    use std::env::temp_dir;
+
+    fn temp_data_dir(name: &str) -> DataDir {
+        let path = temp_dir().join(format!("lattice_node_test_{}", name));
+        // Clean up from previous runs
+        let _ = std::fs::remove_dir_all(&path);
+        DataDir::new(path)
+    }
+
+    #[test]
+    fn test_put_survives_restart() {
+        let data_dir = temp_data_dir("restart");
+        
+        // First session: put a value
+        {
+            let (mut node, _) = LatticeNodeBuilder { data_dir: data_dir.clone() }
+                .build()
+                .expect("Failed to create node");
+            
+            node.put("/test/key", b"hello").expect("put failed");
+            assert_eq!(node.get("/test/key").unwrap(), Some(b"hello".to_vec()));
+        }
+        
+        // Second session: value should still be there
+        {
+            let (node, _) = LatticeNodeBuilder { data_dir: data_dir.clone() }
+                .build()
+                .expect("Failed to create node on restart");
+            
+            assert_eq!(node.get("/test/key").unwrap(), Some(b"hello".to_vec()));
+            assert_eq!(node.status().log_seq, 1);
+        }
+        
+        // Cleanup
+        let _ = std::fs::remove_dir_all(data_dir.base());
+    }
+
+    #[test]
+    fn test_log_replay_after_db_deletion() {
+        let data_dir = temp_data_dir("replay");
+        
+        // First session: put some values
+        {
+            let (mut node, _) = LatticeNodeBuilder { data_dir: data_dir.clone() }
+                .build()
+                .expect("Failed to create node");
+            
+            node.put("/key1", b"value1").expect("put failed");
+            node.put("/key2", b"value2").expect("put failed");
+            node.delete("/key1").expect("delete failed");
+        }
+        
+        // Delete state.db but keep the log
+        let db_path = data_dir.state_db();
+        std::fs::remove_file(&db_path).expect("Failed to delete state.db");
+        assert!(!db_path.exists(), "state.db should be deleted");
+        
+        // Third session: log should be replayed to reconstruct state
+        {
+            let (node, info) = LatticeNodeBuilder { data_dir: data_dir.clone() }
+                .build()
+                .expect("Failed to rebuild node from log");
+            
+            // Should have replayed 3 entries
+            assert_eq!(info.entries_replayed, 3);
+            // key1 was deleted
+            assert_eq!(node.get("/key1").unwrap(), None);
+            // key2 should still exist
+            assert_eq!(node.get("/key2").unwrap(), Some(b"value2".to_vec()));
+            // log seq should be 3 (put, put, delete)
+            assert_eq!(node.status().log_seq, 3);
+        }
+        
+        // Cleanup
+        let _ = std::fs::remove_dir_all(data_dir.base());
+    }
+}
+

lattice-core/src/store.rs

@@ -66,50 +66,67 @@ impl Store {
         Ok(Self { db })
     }
     
-    /// Replay a log file and apply all entries to the store
+    /// Replay a log file and apply all entries to the store (batched)
     pub fn replay_log(&self, log_path: impl AsRef<Path>) -> Result<u64, StoreError> {
         let entries = read_entries(log_path)?;
-        let mut count = 0u64;
-        
-        for signed_entry in entries {
-            self.apply_entry(&signed_entry)?;
-            count += 1;
+        if entries.is_empty() {
+            return Ok(0);
         }
         
-        Ok(count)
-    }
-    
-    /// Apply a single signed entry to the store
-    pub fn apply_entry(&self, signed_entry: &SignedEntry) -> Result<(), StoreError> {
-        let entry = Entry::decode(&signed_entry.entry_bytes[..])?;
-        
         let write_txn = self.db.begin_write()?;
         {
             let mut kv_table = write_txn.open_table(KV_TABLE)?;
             let mut meta_table = write_txn.open_table(META_TABLE)?;
             
-            // Apply operations
-            for op in entry.ops {
-                if let Some(op_type) = op.op_type {
-                    match op_type {
-                        operation::OpType::Put(put) => {
-                            kv_table.insert(put.key.as_str(), put.value.as_slice())?;
-                        }
-                        operation::OpType::Delete(del) => {
-                            kv_table.remove(del.key.as_str())?;
-                        }
+            for signed_entry in &entries {
+                Self::apply_ops_to_tables(signed_entry, &mut kv_table, &mut meta_table)?;
+            }
+        }
+        write_txn.commit()?;
+        
+        Ok(entries.len() as u64)
+    }
+    
+    /// Apply a single signed entry to the store
+    pub fn apply_entry(&self, signed_entry: &SignedEntry) -> Result<(), StoreError> {
+        let write_txn = self.db.begin_write()?;
+        {
+            let mut kv_table = write_txn.open_table(KV_TABLE)?;
+            let mut meta_table = write_txn.open_table(META_TABLE)?;
+            Self::apply_ops_to_tables(signed_entry, &mut kv_table, &mut meta_table)?;
+        }
+        write_txn.commit()?;
+        Ok(())
+    }
+    
+    /// Internal: apply operations from a signed entry to tables
+    fn apply_ops_to_tables(
+        signed_entry: &SignedEntry,
+        kv_table: &mut redb::Table<&str, &[u8]>,
+        meta_table: &mut redb::Table<&str, &[u8]>,
+    ) -> Result<(), StoreError> {
+        let entry = Entry::decode(&signed_entry.entry_bytes[..])?;
+        
+        // Apply operations
+        for op in entry.ops {
+            if let Some(op_type) = op.op_type {
+                match op_type {
+                    operation::OpType::Put(put) => {
+                        kv_table.insert(put.key.as_str(), put.value.as_slice())?;
+                    }
+                    operation::OpType::Delete(del) => {
+                        kv_table.remove(del.key.as_str())?;
                     }
                 }
             }
-            
-            // Update meta
-            meta_table.insert(META_LAST_SEQ, &entry.seq.to_le_bytes()[..])?;
-            
-            // Compute and store hash of this entry
-            let hash: [u8; 32] = blake3::hash(&signed_entry.entry_bytes).into();
-            meta_table.insert(META_LAST_HASH, &hash[..])?;
         }
-        write_txn.commit()?;
+        
+        // Update meta
+        meta_table.insert(META_LAST_SEQ, &entry.seq.to_le_bytes()[..])?;
+        
+        // Hash the full SignedEntry (includes signature), not just entry_bytes
+        let hash: [u8; 32] = blake3::hash(&signed_entry.encode_to_vec()).into();
+        meta_table.insert(META_LAST_HASH, &hash[..])?;
         
         Ok(())
     }
@@ -122,28 +139,17 @@ impl Store {
         Ok(table.get(key)?.map(|v| v.value().to_vec()))
     }
     
-    /// Put a value (use SigChain.create_entry for proper signing)
-    /// This is a low-level method for direct writes
-    pub fn put(&self, key: &str, value: &[u8]) -> Result<(), StoreError> {
-        let write_txn = self.db.begin_write()?;
-        {
-            let mut table = write_txn.open_table(KV_TABLE)?;
-            table.insert(key, value)?;
-        }
-        write_txn.commit()?;
-        Ok(())
-    }
+    /// List all key-value pairs
+    pub fn list_all(&self) -> Result<Vec<(String, Vec<u8>)>, StoreError> {
+        let read_txn = self.db.begin_read()?;
+        let table = read_txn.open_table(KV_TABLE)?;
         
-    /// Delete a key
-    pub fn delete(&self, key: &str) -> Result<bool, StoreError> {
-        let write_txn = self.db.begin_write()?;
-        let removed;
-        {
-            let mut table = write_txn.open_table(KV_TABLE)?;
-            removed = table.remove(key)?.is_some();
+        let mut result = Vec::new();
+        for entry in table.iter()? {
+            let (key, value) = entry?;
+            result.push((key.value().to_string(), value.value().to_vec()));
         }
-        write_txn.commit()?;
-        Ok(removed)
+        Ok(result)
     }
     
     /// Get the last applied sequence number
@@ -222,33 +228,33 @@ mod tests {
     }
 
     #[test]
-    fn test_put_get() {
-        let (db_path, _) = temp_paths("put_get");
+    fn test_apply_entry() {
+        let (db_path, _) = temp_paths("apply_entry");
         std::fs::remove_file(&db_path).ok();
         
         let store = Store::open(&db_path).unwrap();
+        let node = Node::generate();
+        let clock = MockClock::new(1000);
         
-        store.put("key1", b"value1").unwrap();
-        store.put("key2", b"value2").unwrap();
+        // Create and apply a put entry
+        let entry1 = EntryBuilder::new(1, HLC::now_with_clock(&clock))
+            .prev_hash([0u8; 32].to_vec())
+            .put("/key1", b"value1".to_vec())
+            .sign(&node);
+        store.apply_entry(&entry1).unwrap();
         
-        assert_eq!(store.get("key1").unwrap(), Some(b"value1".to_vec()));
-        assert_eq!(store.get("key2").unwrap(), Some(b"value2".to_vec()));
-        assert_eq!(store.get("key3").unwrap(), None);
+        assert_eq!(store.get("/key1").unwrap(), Some(b"value1".to_vec()));
+        assert_eq!(store.last_seq().unwrap(), 1);
         
-        std::fs::remove_file(&db_path).ok();
-    }
+        // Create and apply a delete entry
+        let entry2 = EntryBuilder::new(2, HLC::now_with_clock(&clock))
+            .prev_hash([0u8; 32].to_vec()) // simplified for test
+            .delete("/key1")
+            .sign(&node);
+        store.apply_entry(&entry2).unwrap();
         
-    #[test]
-    fn test_delete() {
-        let (db_path, _) = temp_paths("delete");
-        std::fs::remove_file(&db_path).ok();
-        
-        let store = Store::open(&db_path).unwrap();
-        
-        store.put("key", b"value").unwrap();
-        assert!(store.delete("key").unwrap());
-        assert_eq!(store.get("key").unwrap(), None);
-        assert!(!store.delete("key").unwrap()); // Already gone
+        assert_eq!(store.get("/key1").unwrap(), None);
+        assert_eq!(store.last_seq().unwrap(), 2);
         
         std::fs::remove_file(&db_path).ok();
     }